GeodeMaps computes the geodesic distance between two phylogenetic trees, and was described in my thesis Distance Computation in the Space of Phylogenetic Trees.

Download GeodeMaps, version 0.2. (Unzip the download, and follow the installation instructions in the included manual.)

Please let me know if you have any questions, suggestions, or comments, although I am unlikely to release another version of GeodeMaps, as GTP is much faster. Further updates and information about GeodeMaps will appear on this page.

Version Information

v0.2: Fixes the bug that prevented the first edge length from being read from the Newick file in certain cases.

v0.1: Initial version.