Tree Set Viz : Visualizing Tree Space

Papers

Tree Set Visualization

• Hillis, D.M., T.A. Heath, and K. St. John. Analysis and Visualization of Tree Space. Systematic Biology, 54(3):471 - 482.
  
• Posters at the European Conference for Computational Biology (ECCB 03) in Paris, September 2003:
  
  Ingrid Montealegre and Katherine St. John, Visualizing Restricted Landscapes of Phylogenetic Trees.
  
  Ruchi Kalra, Katherine St. John, Luay Nakhleh, and Tandy Warnow, Applications of Clustering and Visualization to Phylogeny.
  
• Nina Amenta and Jeff Klingner. Case Study: Visualizing Sets of Evolutionary Trees, 8th IEEE Symposium on Information Visualization (InfoVis 2002).

Other Projects

• Nina Amenta, Frederick Clark, and Katherine St. John A Linear-time Majority Tree Algorithm
  to appear in the Lecture Notes in Computer Science, Proceedings of the Workshop on Algorithms in Bioinformatics (WABI 2003), Budapest, September 2003.
  
  A two page abstract of this paper was accepted for a short presentation at the European Conference for Computational Biology (ECCB 03, Paris, September 2003) and publication in the poster proceedings of the conference.
  
• Tamara Munzner, Francois Guimbretiere, Serdar Tasiran, Li Zhang, and Yunhong Zhou. TreeJuxtaposer: Scalable Tree Comparison using Focus+Context with Guaranteed Visibility, SIGGRAPH 2003.
  
• In addition to visualization, we have also been working on automatic clustering of phylogenetic trees:
  Cara Stockham, Li-San Wang, and Tandy Warnow. Statistically Based Postprocessing of Phylogenetic Analysis by Clustering 10th International Conference on Intelligent Systems and Molecular Biology (ISMB'02), August 2002.