Mesquite & Tree Set Visualization
Windows
- You will be downloading 3 files to your computer.
- Make sure you have the latest version of JDK(Java)
- You will need a program that opens zipped files (eg. Winzip).
Mesquite (copyright © 2002-2003 W. & D. Maddison)
Step 1: Click on this button to download mesquiteInstall.exe.
Save this file to a folder on your computer.
Step 2: Run the mesquiteInstaller. This will create the file structure for the Mesquite Program
and put the Mesquite icon in the Start menu. The folder "Mesquite_Folder" will be created in the directory you
specify.
Step 3: Click on this button to download mesquite.zip. Save this file to your computer.
Step 4: Open the mesquite.zip file and extract all zipped files to a directory on your computer.
This will create a folder called "Put_in_Mesquite_Folder" and will automatically put the zipped files
in this folder.
Step 5: Copy all the files/folders in the "Put_in_Mesquite_Folder" to the "Mesquite_Folder". At
this point you should be able to start the Mesquite program by going to the start menu and clicking on the
Mesquite icon.
Tree Set Visualization (UT Austin & Lehman College,CUNY)
Step 6:Click on this button to download the tree set visualization module.
Save this file to your computer.
Step 7:The treecomp_2.1.tar.gz is a zipped file. Open this file and extract the files to a
directory. This will create a folder called "treecomp2.1" and will automatically put the zipped files
in this folder.
Step 8: Copy the treecomp folder, which is in the treecomp_2.1/classfiles/ directory and
paste it in the folder "Mesquite_Folder/mesquite" . These are the class files and the Tree Set Visualization Module
should be able to run at this point.
Step 9:For the source files, copy the source folder in the treecomp_2.1/
directory. You can put the source anywhere, but it might be better to rename the folder(eg. treecompSource)
and then save it in the Mesquite_Folder/mesquite
directory.
Compiling
The treecomp java files are in a package. Keep that in mind when compiling the java files.
Example of compiling from the command prompt
1. switch to directory where java files are located..
[prompt$] cd c:\Mesquite_Folder\mesquite\treecompSource\TreeSetVisualization
2. compile at folder level and place class files in their directory
[prompt$..TreeSetVisualization] javac -classpath c:\Mesquite_Folder TreeSetVisualization.java -d c:\Mesquite_Folder
- Mesquite - © W. Maddison & D. Maddison 2002-2003
- Tree Set Visualization Module - Center for Computational Biology and Bioinformatics,
University of Texas at Austin; and Math and Computer Science Department, Lehman College, CUNY