Mesquite 0.994 & Tree Set Visualization 2.0
MacIntosh OS X (see below for MacIntosh OS 8 or 9)
- Requirements: OS X 10.1
- Make sure you have the current version of Java
- You will need a program that decompresses files.
- Delete any previous version of Mesquite installed on your system.
Step 1: Click on the mesquite.dmg button to download. If you are having problems with
downloading the dmg file, click on the mesquite.sit instead.
Step 2: If you downloaded the .dmg file, double click on the file to mount the disk image. Drag the
contained "Mesquite_Folder" to your hard drive to install. Otherwise download and unstuff the .sit file. Both
methods will create a folder "Mesquite_Folder" that contains several folders and files. At this point you can
start Mesquite by clicking on the mesquite icon in this folder.
Tree Set Visualization
Step 3: Click on this button to download the treecomp module.
Save this file to your computer.
Step 4:Decompress this file and take the resultant folder "treecomp", which contains the Mesquite package and
place it in the Mesquuite directory "..../Mesquite_Folder/mesquite"
Step 5:For the source files, click this button.You can put the source anywhere, but it might be
more convenient to put it in a new folder and save it in the Mesquite_Folder/mesquite directory.
treecomp-source-2.0.tar.gz
directory.
MacIntosh OS 8 or 9
- Requirements: MRJ 2.2 (www.apple.com/java)
- You will need a program that decompresses files.
- Delete any previous version of Mesquite installed on your system.
Step 1: Click on this button to download .sit .
By downloading and unstuffing the .sit file,
a folder called "Mesquite_Folder" that contains several folders and files will be created. At this point you can
start Mesquite by clicking on the mesquite icon in this folder.
Tree Set Visualization
Step 2: Click on this button to download the treecomp module.
Save this file to your computer.
Step 3:Decompress this file and take the resultant folder "treecomp", which contains the Mesquite package and
place it in the Mesquite directory "....\Mesquite_Folder\mesquite"
Step 4:For the source files, click this button.You can put the source anywhere, but it might be
more convenient to put it in a new folder and save it in the Mesquite_Folder\mesquite directory.
treecomp-source-2.0.tar.gz
directory.
Compiling
The treecomp java files are in a package. Keep that in mind when compiling the java files.
Example of compiling from the command prompt
1. switch to directory where java files are located..
[prompt$] cd c:\Mesquite_Folder\mesquite\treecompSource\TreeSetVisualization
2. compile at folder level and place class files in their directory
[prompt$..TreeSetVisualization] javac -classpath c:\Mesquite_Folder TreeSetVisualization.java -d c:\Mesquite_Folder
- Mesquite - © W. Maddison & D. Maddison 2002-2003
- Tree Set Visualization Module - Center for Computational Biology and Bioinformatics,
University of Texas at Austin; and Math and Computer Science Department, Lehman College, CUNY